Splice Site Prediction
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Benchmarks
GUE
Most implemented
DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Fast and Low-Cost Genomic Foundation Models via Outlier Removal
AdvanceSplice: Integrating N-gram one-hot encoding and ensemble modeling for enhanced accuracy
Identifying DNA Sequence Motifs Using Deep Learning
Papers
Fast and Low-Cost Genomic Foundation Models via Outlier Removal
We propose the first unified adversarial attack benchmark for Genomic Foundation Models (GFMs), named GERM. Unlike existing GFM benchmarks, GERM offers the first comprehensive evaluation framework to systematically asses…
Adversarial AttackAdversarial RobustnessComputational EfficiencyDNA analysis+5AdvanceSplice: Integrating N-gram one-hot encoding and ensemble modeling for enhanced accuracy
Accurate splice site prediction is a critical challenge in genomics, essential for understanding gene expression and disease-associated mutations. Splice sites mark the boundaries between exons and introns in genetic seq…
ClassificationData VisualizationEnsemble LearningFeature Engineering+2Identifying DNA Sequence Motifs Using Deep Learning
Splice sites play a crucial role in gene expression, and accurate prediction of these sites in DNA sequences is essential for diagnosing and treating genetic disorders. We address the challenge of splice site prediction …
Deep LearningPredictionSplice Site PredictionDNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area. Existing works…
Computational EfficiencyCore Promoter DetectionCovid Variant PredictionData Compression+9Sequential Labelling and DNABERT For Splice Site Prediction in Homo Sapiens DNA
Genome sequencing technology has improved significantly in few last years and resulted in abundance genetic data. Artificial intelligence has been employed to analyze genetic data in response to its sheer size and variab…
PredictionSplice Site PredictionSpliceCombo: A Hybrid Technique efficiently use for Principal Component Analysis of Splice Site Prediction
The primary step in search of the gene prediction is an identification of the coding region from genomic DNA sequence. Gene structure in the case of a eukaryotic organism is composed of promoter, intron, start codon, exo…
feature selectionPredictionSensitivitySpecificity+1