Transcription Factor Binding Site Prediction
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690 ChIP-seq
Most implemented
DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Papers
GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding
Large Language Models (LLMs) are increasingly adopted as conversational assistants in genomics, where they are mainly used to reason over biological knowledge, annotations, and analysis outputs through natural language i…
Transcription Factor Binding Site PredictionExplainable AI in Genomics: Transcription Factor Binding Site Prediction with Mixture of Experts
Transcription Factor Binding Site (TFBS) prediction is crucial for understanding gene regulation and various biological processes. This study introduces a novel Mixture of Experts (MoE) approach for TFBS prediction, inte…
Transcription Factor Binding Site PredictionGCBLANE: A graph-enhanced convolutional BiLSTM attention network for improved transcription factor binding site prediction
Identifying transcription factor binding sites (TFBS) is crucial for understanding gene regulation, as these sites enable transcription factors (TFs) to bind to DNA and modulate gene expression. Despite advances in high-…
Graph Neural NetworkTranscription Factor Binding Site PredictionDNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area. Existing works…
Computational EfficiencyCore Promoter DetectionCovid Variant PredictionData Compression+9Convolutional Kitchen Sinks for Transcription Factor Binding Site Prediction
We present a simple and efficient method for prediction of transcription factor binding sites from DNA sequence. Our method computes a random approximation of a convolutional kernel feature map from DNA sequence and then…
PredictionTranscription Factor Binding Site Prediction