@article{freezediffusedecodegeometryawareadaptati, title = {Freeze, Diffuse, Decode: Geometry-Aware Adaptation of Pretrained Transformer Embeddings for Antimicrobial Peptide Design}, author = {Pankhil Gawade and Adam Izdebski and Myriam Lizotte and Kevin R. Moon and Jake S. Rhodes and Guy Wolf and Ewa Szczurek}, year = {2025}, eprint = {2511.23120}, archivePrefix = {arXiv}, url = {https://arxiv.org/abs/2511.23120}, }