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A BERT-based Universal Model for Both Within- and Cross-sentence Clinical Temporal Relation Extraction

2019-06-01 · WS 2019 6 · Chen Lin, Timothy Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova

Classic methods for clinical temporal relation extraction focus on relational candidates within a sentence. On the other hand, break-through Bidirectional Encoder Representations from Transformers (BERT) are trained on large quantities of arbitrary spans of contiguous text instead of sentences. In this study, we aim to build a sentence-agnostic framework for the task of CONTAINS temporal relation extraction. We establish a new state-of-the-art result for the task, 0.684F for in-domain (0.055-point improvement) and 0.565F for cross-domain (0.018-point improvement), by fine-tuning BERT and pre-training domain-specific BERT models on sentence-agnostic temporal relation instances with WordPiece-compatible encodings, and augmenting the labeled data with automatically generated {``}silver{''} instances.

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RelationRelation ExtractionSentenceTemporal Relation Extraction

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Linear Layer A Linear Layer is a projection $\mathbf{XW + b}$.
Residual Connection 설명 없음
Attention Dropout Attention Dropout is a type of dropout used in attention-based architectures, where elements are randomly dropped out of the…
Linear Warmup With Linear Decay Linear Warmup With Linear Decay is a learning rate schedule in which we increase the learning rate linearly for $n$ updates and then linearly decay afterwards.
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Dense Connections Dense Connections, or Fully Connected Connections, are a type of layer in a deep neural network that use a linear operation where every input is connected to every output…
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