A Value Mapping Virtual Staining Framework for Large-scale Histological Imaging
The emergence of virtual staining technology provides a rapid and efficient alternative for researchers in tissue pathology. It enables the utilization of unlabeled microscopic samples to generate virtual replicas of chemically stained histological slices, or facilitate the transformation of one staining type into another. The remarkable performance of generative networks, such as CycleGAN, offers an unsupervised learning approach for virtual coloring, overcoming the limitations of high-quality paired data required in supervised learning. Nevertheless, large-scale color transformation necessitates processing large field-of-view images in patches, often resulting in significant boundary inconsistency and artifacts. Additionally, the transformation between different colorized modalities typically needs further efforts to modify loss functions and tune hyperparameters for independent training of networks. In this study, we introduce a general virtual staining framework that is adaptable to various conditions. We propose a loss function based on the value mapping constraint to ensure the accuracy of virtual coloring between different pathological modalities, termed the Value Mapping Generative Adversarial Network (VM-GAN). Meanwhile, we present a confidence-based tiling method to address the challenge of boundary inconsistency arising from patch-wise processing. Experimental results on diverse data with varying staining protocols demonstrate that our method achieves superior quantitative indicators and improved visual perception.
Code (0)
등록된 구현이 없습니다.
Tasks
Generative Adversarial NetworkVirtual StainingMethods 이 논문이 사용한 방법론
Similar Papers 제목 키워드 기반
Virtual Staining of Label-Free Tissue in Imaging Mass Spectrometry
Imaging mass spectrometry (IMS) is a powerful tool for untargeted, highly multiplexed molecular mapping of tissue in biomedical research. IMS offers a means of mapping the spatial distributions of molecular species in bi…
Image RegistrationSpecificityVirtual StainingVirtual staining of defocused autofluorescence images of unlabeled tissue using deep neural networks
Deep learning-based virtual staining was developed to introduce image contrast to label-free tissue sections, digitally matching the histological staining, which is time-consuming, labor-intensive, and destructive to tis…
Collaborative InferenceVirtual StainingVirtual Gram staining of label-free bacteria using darkfield microscopy and deep learning
Gram staining has been one of the most frequently used staining protocols in microbiology for over a century, utilized across various fields, including diagnostics, food safety, and environmental monitoring. Its manual p…
USIGAN: Unbalanced Self-Information Feature Transport for Weakly Paired Image IHC Virtual Staining
Immunohistochemical (IHC) virtual staining is a task that generates virtual IHC images from H\&E images while maintaining pathological semantic consistency with adjacent slices. This task aims to achieve cross-domain map…
Virtual StainingLabel-free virtual HER2 immunohistochemical staining of breast tissue using deep learning
The immunohistochemical (IHC) staining of the human epidermal growth factor receptor 2 (HER2) biomarker is widely practiced in breast tissue analysis, preclinical studies and diagnostic decisions, guiding cancer treatmen…
DiagnosticGenerative Adversarial Networkwhole slide images