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Papers

Cluster-based human-in-the-loop strategy for improving machine learning-based circulating tumor cell detection in liquid biopsy

2024-11-25 · Hümeyra Husseini-Wüsthoff, Sabine Riethdorf, Andreas Schneeweiss, Andreas Trumpp, Klaus Pantel, Harriet Wikman, Maximilian Nielsen, René Werner

Detection and differentiation of circulating tumor cells (CTCs) and non-CTCs in blood draws of cancer patients pose multiple challenges. While the gold standard relies on tedious manual evaluation of an automatically generated selection of images, machine learning (ML) techniques offer the potential to automate these processes. However, human assessment remains indispensable when the ML system arrives at uncertain or wrong decisions due to an insufficient set of labeled training data. This study introduces a human-in-the-loop (HiL) strategy for improving ML-based CTC detection. We combine self-supervised deep learning and a conventional ML-based classifier and propose iterative targeted sampling and labeling of new unlabeled training samples by human experts. The sampling strategy is based on the classification performance of local latent space clusters. The advantages of the proposed approach compared to naive random sampling are demonstrated for liquid biopsy data from patients with metastatic breast cancer.

📄 PDF Abstract BibTeX arXiv:2411.16332

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Tasks

Cell Detection

Methods 이 논문이 사용한 방법론

SET Dynamic Sparse Training method where weight mask is updated randomly periodically

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