Data-driven Advice for Applying Machine Learning to Bioinformatics Problems

2017-08-08 · Randal S. Olson, William La Cava, Zairah Mustahsan, Akshay Varik, Jason H. Moore

As the bioinformatics field grows, it must keep pace not only with new data but with new algorithms. Here we contribute a thorough analysis of 13 state-of-the-art, commonly used machine learning algorithms on a set of 165 publicly available classification problems in order to provide data-driven algorithm recommendations to current researchers. We present a number of statistical and visual comparisons of algorithm performance and quantify the effect of model selection and algorithm tuning for each algorithm and dataset. The analysis culminates in the recommendation of five algorithms with hyperparameters that maximize classifier performance across the tested problems, as well as general guidelines for applying machine learning to supervised classification problems.

📄 PDF Abstract BibTeX arXiv:1708.05070

Code (2)

rhiever/sklearn-benchmarks 공식 구현

stevensmiley1989/BreastCancer

Tasks

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