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De novo Drug Design using Reinforcement Learning with Multiple GPT Agents

2023-12-21 · NeurIPS 2023 11 · Xiuyuan Hu, Guoqing Liu, Yang Zhao, Hao Zhang

De novo drug design is a pivotal issue in pharmacology and a new area of focus in AI for science research. A central challenge in this field is to generate molecules with specific properties while also producing a wide range of diverse candidates. Although advanced technologies such as transformer models and reinforcement learning have been applied in drug design, their potential has not been fully realized. Therefore, we propose MolRL-MGPT, a reinforcement learning algorithm with multiple GPT agents for drug molecular generation. To promote molecular diversity, we encourage the agents to collaborate in searching for desirable molecules in diverse directions. Our algorithm has shown promising results on the GuacaMol benchmark and exhibits efficacy in designing inhibitors against SARS-CoV-2 protein targets. The codes are available at: https://github.com/HXYfighter/MolRL-MGPT.

📄 PDF Abstract BibTeX arXiv:2401.06155

Code (2)

hxyfighter/molrl-mgpt 공식 구현 pytorch
hyeonahkimm/genetic_gfn pytorch

Tasks

DiversityDrug Designreinforcement-learningReinforcement Learning

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Multi-Head Attention 설명 없음
Attention 설명 없음
Linear Layer A Linear Layer is a projection $\mathbf{XW + b}$.
Dropout Dropout is a regularization technique for neural networks that drops a unit (along with connections) at training time with a specified probability $p$ (a common value is…
Adam 설명 없음
Cosine Annealing Cosine Annealing is a type of learning rate schedule that has the effect of starting with a large learning rate that is relatively rapidly decreased to a minimum value before…
Dense Connections Dense Connections, or Fully Connected Connections, are a type of layer in a deep neural network that use a linear operation where every input is connected to every output…

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