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Deep Object Detection based Mitosis Analysis in Breast Cancer Histopathological Images

2020-03-17 · Anabia Sohail, Muhammad Ahsan Mukhtar, Asifullah Khan, Muhammad Mohsin Zafar, Aneela Zameer, Saranjam Khan

Empirical evaluation of breast tissue biopsies for mitotic nuclei detection is considered an important prognostic biomarker in tumor grading and cancer progression. However, automated mitotic nuclei detection poses several challenges because of the unavailability of pixel-level annotations, different morphological configurations of mitotic nuclei, their sparse representation, and close resemblance with non-mitotic nuclei. These challenges undermine the precision of the automated detection model and thus make detection difficult in a single phase. This work proposes an end-to-end detection system for mitotic nuclei identification in breast cancer histopathological images. Deep object detection-based Mask R-CNN is adapted for mitotic nuclei detection that initially selects the candidate mitotic region with maximum recall. However, in the second phase, these candidate regions are refined by multi-object loss function to improve the precision. The performance of the proposed detection model shows improved discrimination ability (F-score of 0.86) for mitotic nuclei with significant precision (0.86) as compared to the two-stage detection models (F-score of 0.701) on TUPAC16 dataset. Promising results suggest that the deep object detection-based model has the potential to learn the characteristic features of mitotic nuclei from weakly annotated data and suggests that it can be adapted for the identification of other nuclear bodies in histopathological images.

📄 PDF Abstract BibTeX arXiv:2003.08803

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Objectobject-detectionObject Detection

Methods 이 논문이 사용한 방법론

RPN A Region Proposal Network, or RPN, is a fully convolutional network that simultaneously predicts object bounds and objectness scores at each position. The RPN is trained…
Softmax The Softmax output function transforms a previous layer's output into a vector of probabilities. It is commonly used for multiclass classification. Given an input vector $x$…
Convolution A convolution is a type of matrix operation, consisting of a kernel, a small matrix of weights, that slides over input data performing element-wise multiplication with the…
RoIAlign Region of Interest Align, or RoIAlign, is an operation for extracting a small feature map from each RoI in detection and segmentation based tasks. It removes the harsh…
Mask R-CNN Mask R-CNN extends Faster R-CNN to solve instance segmentation tasks. It achieves this by adding a branch for predicting an…

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