Improving BERT Model Using Contrastive Learning for Biomedical Relation Extraction
Contrastive learning has been used to learn a high-quality representation of the image in computer vision. However, contrastive learning is not widely utilized in natural language processing due to the lack of a general method of data augmentation for text data. In this work, we explore the method of employing contrastive learning to improve the text representation from the BERT model for relation extraction. The key knob of our framework is a unique contrastive pre-training step tailored for the relation extraction tasks by seamlessly integrating linguistic knowledge into the data augmentation. Furthermore, we investigate how large-scale data constructed from the external knowledge bases can enhance the generality of contrastive pre-training of BERT. The experimental results on three relation extraction benchmark datasets demonstrate that our method can improve the BERT model representation and achieve state-of-the-art performance. In addition, we explore the interpretability of models by showing that BERT with contrastive pre-training relies more on rationales for prediction. Our code and data are publicly available at: https://github.com/udel-biotm-lab/BERT-CLRE.
Code (1)
Tasks
Contrastive LearningData AugmentationRelationRelation ExtractionMethods 이 논문이 사용한 방법론
Similar Papers 제목 키워드 기반
BioNCERE: Non-Contrastive Enhancement For Relation Extraction In Biomedical Texts
State-of-the-art models for relation extraction (RE) in the biomedical domain consider finetuning BioBERT using classification, but they may suffer from the anisotropy problem. Contrastive learning methods can reduce thi…
Contrastive LearningRelationRelation ExtractionTransfer LearningComparing Encoder-Only and Encoder-Decoder Transformers for Relation Extraction from Biomedical Texts: An Empirical Study on Ten Benchmark Datasets
Biomedical relation extraction, aiming to automatically discover high-quality and semantic relations between the entities from free text, is becoming a vital step for automated knowledge discovery. Pretrained language mo…
DecoderMulti-Task LearningRelationRelation ExtractionInvestigation of BERT Model on Biomedical Relation Extraction Based on Revised Fine-tuning Mechanism
With the explosive growth of biomedical literature, designing automatic tools to extract information from the literature has great significance in biomedical research. Recently, transformer-based BERT models adapted to t…
RelationRelation ClassificationRelation ExtractionBERT-GT: Cross-sentence n-ary relation extraction with BERT and Graph Transformer
A biomedical relation statement is commonly expressed in multiple sentences and consists of many concepts, including gene, disease, chemical, and mutation. To automatically extract information from biomedical literature,…
BenchmarkingBinary Relation ExtractionGraph Neural NetworkRelation+2Relation Extraction Using Multiple Pre-Training Models in Biomedical Domain
The number of biomedical documents is increasing rapidly. Accordingly, a demand for extracting knowledge from large-scale biomedical texts is also increasing. BERT-based models are known for their high performance in var…
GPURelationRelation Extraction