paper-with-me

Papers

Intracellular Energy Variability Modulates Cellular Decision-Making Capacity

2019-12-13 · Ryan Kerr, Sara Jabbari, Iain G. Johnston

Cells are able to generate phenotypic diversity both during development and in response to stressful and changing environments, aiding survival. The biologically and medically vital process of a cell assuming a functionally important fate from a range of phenotypic possibilities can be thought of as a cell decision. To make these decisions, a cell relies on energy dependent pathways of signalling and expression. However, energy availability is often overlooked as a modulator of cellular decision-making. As cells can vary dramatically in energy availability, this limits our knowledge of how this key biological axis affects cell behaviour. Here, we consider the energy dependence of a highly generalisable decision-making regulatory network, and show that energy variability changes the sets of decisions a cell can make and the ease with which they can be made. Increasing intracellular energy levels can increase the number of stable phenotypes it can generate, corresponding to increased decision-making capacity. For this decision-making architecture, a cell with intracellular energy below a threshold is limited to a singular phenotype, potentially forcing the adoption of a specific cell fate. We suggest that common energetic differences between cells may explain some of the observed variability in cellular decision-making, and demonstrate the importance of considering energy levels in several diverse biological decision-making phenomena.

📄 PDF Abstract BibTeX arXiv:1912.06591

Code (0)

등록된 구현이 없습니다.

Tasks

Decision Making

Similar Papers 제목 키워드 기반

Mathematical modeling of variability in intracellular signaling

2019-04-17

Cellular signaling is essential in information processing and decision making. Therefore, a variety of experimental approaches have been developed to study signaling on bulk and single-cell level. Single-cell measurement…

Decision Making

Nonequilibrium and nonlinear kinetics as key determinants for bistability in fission yeast G2-M transition

2016-10-30 · De Zhao, Teng Wang, Jian Zhao, Dianjie Li 외

A living cell is an open, nonequilibrium biochemical system where ATP hydrolysis serves as the energy source for a wide range of intracellular processes, possibly including the assurance for decision-making. In the fissi…

Decision Making

Intracellular order formation through stepwise phase transitions

2024-08-26 · Yuika Ueda, Shinji Deguchi

Living cells inherently exhibit the ability to spontaneously reorganize their structures in response to changes in both their internal and external environments. Among these responses, the organization of stress fibers c…

Inferring synaptic conductances from spike trains with a biophysically inspired point process model

2014-12-01 · NeurIPS 2014 12 · Kenneth W. Latimer, E.J. Chichilnisky, Fred Rieke, Jonathan W. Pillow

A popular approach to neural characterization describes neural responses in terms of a cascade of linear and nonlinear stages: a linear filter to describe stimulus integration, followed by a nonlinear function to convert…

Bayesian Metabolic Flux Analysis reveals intracellular flux couplings

2018-04-18 · Markus Heinonen, Maria Osmala, Henrik Mannerström, Janne Wallenius 외

Metabolic flux balance analyses are a standard tool in analysing metabolic reaction rates compatible with measurements, steady-state and the metabolic reaction network stoichiometry. Flux analysis methods commonly place …