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Knowledge Graph Embedding for Ecotoxicological Effect Prediction

2019-07-02 · Erik Bryhn Myklebust, Ernesto Jimenez-Ruiz, Jiaoyan Chen, Raoul Wolf, Knut Erik Tollefsen

Exploring the effects a chemical compound has on a species takes a considerable experimental effort. Appropriate methods for estimating and suggesting new effects can dramatically reduce the work needed to be done by a laboratory. In this paper we explore the suitability of using a knowledge graph embedding approach for ecotoxicological effect prediction. A knowledge graph has been constructed from publicly available data sets, including a species taxonomy and chemical classification and similarity. The publicly available effect data is integrated to the knowledge graph using ontology alignment techniques. Our experimental results show that the knowledge graph based approach improves the selected baselines.

📄 PDF Abstract BibTeX arXiv:1907.01328

Code (4)

Erik-BM/NIVAUC 공식 구현 tf
NIVA-Knowledge-Graph/NIVAUC tf
NIVA-Knowledge-Graph/TERA
https://gitlab.com/Erik-BM/rappt

Tasks

Graph EmbeddingKnowledge Graph EmbeddingPrediction

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