paper-with-me

홈 › Papers

Mass spectrometry for semi-experimental protein structure determination and modeling

2020-02-29 · Gerhard Mayer

The structure of proteins is essential for its function. The determination of protein structures is possible by experimental or predicted by computational methods, but also a combination of both approaches is possible. Here, first an overview about experimental structure determination methods with their pros and cons is given. Then we describe how mass spectrometry is useful for semi-experimental integrative protein structure determination. We review the methodology and describe software programs supporting such integrated protein structure prediction approaches, making use of distance constraints got from mass spectrometry cross-linking experiments

📄 PDF Abstract BibTeX arXiv:2003.00328

Code (0)

등록된 구현이 없습니다.

Tasks

Protein Structure Prediction

Similar Papers 제목 키워드 기반

Identifying metabolites from protein identifiers with P2M

2023-07-07 · Christine H. Chang, Bryan J. Killinger, Ryan S. Renslow, Sean M. Colby

The identification of metabolites from complex biological samples often involves matching experimental mass spectrometry data to signatures of compounds derived from massive chemical databases. However, misidentification…

Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry

2024-05-15 · Prashant Kaushal, Manisha R. Ummadi, Gwendolyn M. Jang, Yennifer Delgado 외

Proteins congregate into complexes to perform fundamental cellular functions. Phenotypic outcomes, in health and disease, are often mechanistically driven by the remodeling of protein complexes by protein coding mutation…

Comprehensive Overview of Bottom-up Proteomics using Mass Spectrometry

2023-11-13 · Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A. Neely 외

Proteomics is the large scale study of protein structure and function from biological systems through protein identification and quantification. "Shotgun proteomics" or "bottom-up proteomics" is the prevailing strategy, …

Sampling the proteome by emerging single-molecule and mass-spectrometry methods

2022-07-31 · Michael J. MacCoss, Javier Alfaro, Meni Wanunu, Danielle A. Faivre 외

Mammalian cells have about 30,000-fold more protein molecules than mRNA molecules. This larger number of molecules and the associated larger dynamic range have major implications in the development of proteomics technolo…

Towards Increased Reliability, Transparency and Accessibility in Crosslinking Mass Spectrometry

2020-07-01 · Alexander Leitner, Alexandre M. J. J. Bonvin, Christoph H. Borchers, Robert J. Chalkley 외

Crosslinking mass spectrometry (Crosslinking MS) has substantially matured as a method over the last two decades through parallel development in multiple labs, demonstrating its applicability for protein structure determ…