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MDF-Net for abnormality detection by fusing X-rays with clinical data

2023-02-26 · Chihcheng Hsieh, Isabel Blanco Nobre, Sandra Costa Sousa, Chun Ouyang, Margot Brereton, Jacinto C. Nascimento, Joaquim Jorge, Catarina Moreira

This study investigates the effects of including patients' clinical information on the performance of deep learning (DL) classifiers for disease location in chest X-ray images. Although current classifiers achieve high performance using chest X-ray images alone, our interviews with radiologists indicate that clinical data is highly informative and essential for interpreting images and making proper diagnoses. In this work, we propose a novel architecture consisting of two fusion methods that enable the model to simultaneously process patients' clinical data (structured data) and chest X-rays (image data). Since these data modalities are in different dimensional spaces, we propose a spatial arrangement strategy, spatialization, to facilitate the multimodal learning process in a Mask R-CNN model. We performed an extensive experimental evaluation using MIMIC-Eye, a dataset comprising modalities: MIMIC-CXR (chest X-ray images), MIMIC IV-ED (patients' clinical data), and REFLACX (annotations of disease locations in chest X-rays). Results show that incorporating patients' clinical data in a DL model together with the proposed fusion methods improves the disease localization in chest X-rays by 12\% in terms of Average Precision compared to a standard Mask R-CNN using only chest X-rays. Further ablation studies also emphasize the importance of multimodal DL architectures and the incorporation of patients' clinical data in disease localization. The architecture proposed in this work is publicly available to promote the scientific reproducibility of our study (https://github.com/ChihchengHsieh/multimodal-abnormalities-detection)

📄 PDF Abstract BibTeX arXiv:2302.13390

Code (1)

chihchenghsieh/multimodal-abnormalities-detection 공식 구현 pytorch

Tasks

Anomaly Detection

Methods 이 논문이 사용한 방법론

RoIAlign Region of Interest Align, or RoIAlign, is an operation for extracting a small feature map from each RoI in detection and segmentation based tasks. It removes the harsh…
Softmax The Softmax output function transforms a previous layer's output into a vector of probabilities. It is commonly used for multiclass classification. Given an input vector $x$…
RPN A Region Proposal Network, or RPN, is a fully convolutional network that simultaneously predicts object bounds and objectness scores at each position. The RPN is trained…
Convolution A convolution is a type of matrix operation, consisting of a kernel, a small matrix of weights, that slides over input data performing element-wise multiplication with the…
Mask R-CNN Mask R-CNN extends Faster R-CNN to solve instance segmentation tasks. It achieves this by adding a branch for predicting an…

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