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Medical Data Augmentation via ChatGPT: A Case Study on Medication Identification and Medication Event Classification

2023-06-10 · Shouvon Sarker, Lijun Qian, Xishuang Dong

The identification of key factors such as medications, diseases, and relationships within electronic health records and clinical notes has a wide range of applications in the clinical field. In the N2C2 2022 competitions, various tasks were presented to promote the identification of key factors in electronic health records (EHRs) using the Contextualized Medication Event Dataset (CMED). Pretrained large language models (LLMs) demonstrated exceptional performance in these tasks. This study aims to explore the utilization of LLMs, specifically ChatGPT, for data augmentation to overcome the limited availability of annotated data for identifying the key factors in EHRs. Additionally, different pre-trained BERT models, initially trained on extensive datasets like Wikipedia and MIMIC, were employed to develop models for identifying these key variables in EHRs through fine-tuning on augmented datasets. The experimental results of two EHR analysis tasks, namely medication identification and medication event classification, indicate that data augmentation based on ChatGPT proves beneficial in improving performance for both medication identification and medication event classification.

📄 PDF Abstract BibTeX arXiv:2306.07297

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Data Augmentation

Methods 이 논문이 사용한 방법론

Multi-Head Attention 설명 없음
Attention 설명 없음
Linear Layer A Linear Layer is a projection $\mathbf{XW + b}$.
Layer Normalization Unlike batch normalization, Layer Normalization directly estimates the normalization statistics from the summed inputs…
Weight Decay 설명 없음
Residual Connection 설명 없음
Softmax The Softmax output function transforms a previous layer's output into a vector of probabilities. It is commonly used for multiclass classification. Given an input vector $x$…
Adam 설명 없음

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