paper-with-me

홈 › Papers

Minimal cellular automaton model with heterogeneous cell sizes predicts epithelial colony growth

2024-03-12 · Steffen Lange, Jannik Schmied, Paul Willam, Anja Voss-Böhme

Regulation of cell proliferation is a crucial aspect of tissue development and homeostasis and plays a major role in morphogenesis, wound healing, and tumor invasion. A phenomenon of such regulation is contact inhibition, which describes the dramatic slowing of proliferation, cell migration and individual cell growth when multiple cells are in contact with each other. While many physiological, molecular and genetic factors are known, the mechanism of contact inhibition is still not fully understood. In particular, the relevance of cellular signaling due to interfacial contact for contact inhibition is still debated. Cellular automata (CA) have been employed in the past as numerically efficient mathematical models to study the dynamics of cell ensembles, but they are not suitable to explore the origins of contact inhibition as such agent-based models assume fixed cell sizes. We develop a minimal, data-driven model to simulate the dynamics of planar cell cultures by extending a probabilistic CA to incorporate size changes of individual cells during growth and cell division. We successfully apply this model to previous in-vitro experiments on contact inhibition in epithelial tissue: After a systematic calibration of the model parameters to measurements of single-cell dynamics, our CA model quantitatively reproduces independent measurements of emergent, culture-wide features, like colony size, cell density and collective cell migration. In particular, the dynamics of the CA model also exhibit the transition from a low-density confluent regime to a stationary postconfluent regime with a rapid decrease in cell size and motion. This implies that the volume exclusion principle, a mechanical constraint which is the only inter-cellular interaction incorporated in the model, paired with a size-dependent proliferation rate is sufficient to generate the observed contact inhibition.

📄 PDF Abstract BibTeX arXiv:2403.07612

Code (0)

등록된 구현이 없습니다.

Similar Papers 제목 키워드 기반

Reservoir Computing using Cellular Automata

2014-10-01 · Ozgur Yilmaz

We introduce a novel framework of reservoir computing. Cellular automaton is used as the reservoir of dynamical systems. Input is randomly projected onto the initial conditions of automaton cells and nonlinear computatio…

Cooperation guides evolution in a minimal model of biological evolution

2025-04-07 · Conor Houghton

A challenging simulation of evolutionary dynamics based on a three-state cellular automaton is used as a test of how cooperation can drive the evolution of complex traits. Building on the approach of Wolfram (2025), the …

Diversity

Self-Replication, Spontaneous Mutations, and Exponential Genetic Drift in Neural Cellular Automata

2023-05-22 · Lana Sinapayen

This paper reports on patterns exhibiting self-replication with spontaneous, inheritable mutations and exponential genetic drift in Neural Cellular Automata. Despite the models not being explicitly trained for mutation o…

A scalable solver for a stochastic, hybrid cellular automaton model of personalized breast cancer therapy

2021-05-02 · Xiaoran Lai, Håkon A. Taskén, Torgeir Mo, Simon W. Funke 외

Mathematical modeling and simulation is a promising approach to personalized cancer medicine. Yet, the complexity, heterogeneity and multi-scale nature of cancer pose significant computational challenges. Coupling discre…

Volumetric Temporal Texture Synthesis for Smoke Stylization using Neural Cellular Automata

2025-02-05 · Dongqing Wang, Ehsan Pajouheshgar, Yitao Xu, Tong Zhang 외

Artistic stylization of 3D volumetric smoke data is still a challenge in computer graphics due to the difficulty of ensuring spatiotemporal consistency given a reference style image, and that within reasonable time and c…

Style TransferTexture Synthesis