MitoSeg: Mitochondria Segmentation Tool
Recent studies suggest a potential link between the physical structure of mitochondria and neurodegenerative diseases. With advances in Electron Microscopy techniques, it has become possible to visualize the boundary and internal membrane structures of mitochondria in detail. It is crucial to automatically segment mitochondria from these images to investigate the relationship between mitochondria and diseases. In this paper, we present a software solution for mitochondrial segmentation, highlighting mitochondria boundaries in electron microscopy tomography images and generating corresponding 3D meshes.
Code (1)
Tasks
SegmentationSimilar Papers 제목 키워드 기반
MiShape: 3D Shape Modelling of Mitochondria in Microscopy
Fluorescence microscopy is a quintessential tool for observing cells and understanding the underlying mechanisms of life-sustaining processes of all living organisms. The problem of extracting 3D shape of mitochondria fr…
3D Shape ReconstructionMitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM Images
Electron microscopy (EM) allows the identification of intracellular organelles such as mitochondria, providing insights for clinical and scientific studies. However, public mitochondria segmentation datasets only contain…
3D Instance SegmentationDiversityInstance SegmentationSegmentation+1Advanced Deep Networks for 3D Mitochondria Instance Segmentation
Mitochondria instance segmentation from electron microscopy (EM) images has seen notable progress since the introduction of deep learning methods. In this paper, we propose two advanced deep networks, named Res-UNet-R an…
3D Instance SegmentationDenoisingInstance SegmentationSegmentation+1Adaptive Template Transformer for Mitochondria Segmentation in Electron Microscopy Images
Mitochondria, as tiny structures within the cell, are of significant importance to study cell functions for biological and clinical analysis. And exploring how to automatically segment mitochondria in electron micros…
Contrastive Learning for Mitochondria Segmentation
Mitochondria segmentation in electron microscopy images is essential in neuroscience. However, due to the image degradation during the imaging process, the large variety of mitochondrial structures, as well as the presen…
Contrastive LearningSegmentation