paper-with-me

Papers

Modeling stripe formation on growing zebrafish tailfins

2019-11-09 · Alexandria Volkening, Madeline R Abbott, Dorothy Catey, Neil Chandra, Bethany Dubois, Francesca Lim, Bjorn Sandstede

As zebrafish develop, black and gold stripes form across their skin due to the interactions of brightly colored pigment cells. These characteristic patterns emerge on the growing fish body, as well as on the anal and caudal fins. While wild-type stripes form parallel to a horizontal marker on the body, patterns on the tailfin gradually extend distally outward. Interestingly, several mutations lead to altered body patterns without affecting fin stripes. Through an exploratory modeling approach, our goal is to help better understand these differences between body and fin patterns. By adapting a prior agent-based model of cell interactions on the fish body, we present an in silico study of stripe development on tailfins. Our main result is a demonstration that two cell types can produce stripes on the caudal fin. We highlight several ways that bone rays, growth, and the body-fin interface may be involved in patterning, and we raise questions for future work related to pattern robustness.

📄 PDF Abstract BibTeX arXiv:1911.03758

Code (0)

등록된 구현이 없습니다.

Similar Papers 제목 키워드 기반

Dynamical Pattern Selection of Growing Cellular Mosaic in Fish Retina

2017-10-12

A Markovian lattice model for photoreceptor cells is introduced to describe the growth of mosaic patterns on fish retina. The radial stripe pattern observed in wild-type zebrafish is shown to be selected naturally during…

The Mean-Field Survival Model for Stripe Formation in Zebrafish Exhibits Turing Instability

2024-11-22 · Robert Jencks

Zebrafish have been used as a model organism in many areas of biology, including the study of pattern formation. The mean-field survival model is a coupled ODE system describing the expected evolution of chromatophores c…

Topological data analysis of zebrafish patterns

2019-10-18

Self-organized pattern behavior is ubiquitous throughout nature, from fish schooling to collective cell dynamics during organism development. Qualitatively these patterns display impressive consistency, yet variability i…

Interpretable Machine LearningTopological Data Analysis

ZAPBench: A Benchmark for Whole-Brain Activity Prediction in Zebrafish

2025-03-04 · Jan-Matthis Lueckmann, Alexander Immer, Alex Bo-Yuan Chen, Peter H. Li 외

Data-driven benchmarks have led to significant progress in key scientific modeling domains including weather and structural biology. Here, we introduce the Zebrafish Activity Prediction Benchmark (ZAPBench) to measure pr…

Activity PredictionMultivariate Time Series ForecastingSpatio-Temporal ForecastingTime Series Forecasting+1

The phenomenon of growing surface interference explains the rosette pattern of jaguar

2017-11-15

One possible mechanism to explain how animals got their coat patterns was proposed by Alan Turing. He assumed that two kinds of morphogens diffuse on a surface and interact with each other, generating a reaction-diffusio…