paper-with-me

Papers

New Techniques for Inferring L-Systems Using Genetic Algorithm

2017-12-01 · Jason Bernard, Ian McQuillan

Lindenmayer systems (L-systems) are a formal grammar system that iteratively rewrites all symbols of a string, in parallel. When visualized with a graphical interpretation, the images have self-similar shapes that appear frequently in nature, and they have been particularly successful as a concise, reusable technique for simulating plants. The L-system inference problem is to find an L-system to simulate a given plant. This is currently done mainly by experts, but this process is limited by the availability of experts, the complexity that may be solved by humans, and time. This paper introduces the Plant Model Inference Tool (PMIT) that infers deterministic context-free L-systems from an initial sequence of strings generated by the system using a genetic algorithm. PMIT is able to infer more complex systems than existing approaches. Indeed, while existing approaches are limited to L-systems with a total sum of 20 combined symbols in the productions, PMIT can infer almost all L-systems tested where the total sum is 140 symbols. This was validated using a test bed of 28 previously developed L-system models, in addition to models created artificially by bootstrapping larger models.

📄 PDF Abstract BibTeX arXiv:1712.00180

Code (0)

등록된 구현이 없습니다.

Similar Papers 제목 키워드 기반

Techniques for Inferring Context-Free Lindenmayer Systems With Genetic Algorithm

2019-05-15 · Jason Bernard, Ian McQuillan

Lindenmayer systems (L-systems) are a formal grammar system, where the most notable feature is a set of rewriting rules that are used to replace every symbol in a string in parallel; by repeating this process, a sequence…

Graph Learning for Inverse Landscape Genetics

2020-06-22 · Prathamesh Dharangutte, Christopher Musco

The problem of inferring unknown graph edges from numerical data at a graph's nodes appears in many forms across machine learning. We study a version of this problem that arises in the field of \emph{landscape genetics},…

Graph Learning

A Fast and Scalable Method for Inferring Phylogenetic Networks from Trees by Aligning Lineage Taxon Strings

2023-01-03 · Louxin Zhang, Niloufar Abhari, Caroline Colijn, Yufeng Wu

The reconstruction of phylogenetic networks is an important but challenging problem in phylogenetics and genome evolution, as the space of phylogenetic networks is vast and cannot be sampled well. One approach to the pro…

Hybrid Genetic Algorithm and Lasso Test Approach for Inferring Well Supported Phylogenetic Trees based on Subsets of Chloroplastic Core Genes

2015-04-20 · Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon 외

The amount of completely sequenced chloroplast genomes increases rapidly every day, leading to the possibility to build large scale phylogenetic trees of plant species. Considering a subset of close plant species defined…

Novel probabilistic models of spatial genetic ancestry with applications to stratification correction in genome-wide association studies

2016-10-25

Genetic variation in human populations is influenced by geographic ancestry due to spatial locality in historical mating and migration patterns. Spatial population structure in genetic datasets has been traditionally ana…