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A kernel- and optimal transport- based test of independence between covariates and right-censored lifetimes

2019-06-10 · David Rindt, Dino Sejdinovic, David Steinsaltz

We propose a nonparametric test of independence, termed optHSIC, between a covariate and a right-censored lifetime. Because the presence of censoring creates a challenge in applying the standard permutation-based testing approaches, we use optimal transport to transform the censored dataset into an uncensored one, while preserving the relevant dependencies. We then apply a permutation test using the kernel-based dependence measure as a statistic to the transformed dataset. The type 1 error is proven to be correct in the case where censoring is independent of the covariate. Experiments indicate that optHSIC has power against a much wider class of alternatives than Cox proportional hazards regression and that it has the correct type 1 control even in the challenging cases where censoring strongly depends on the covariate.

📄 PDF Abstract BibTeX arXiv:1906.03866

Code (1)

davidrindt/kernel_logrank_python_code

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