paper-with-me

홈 › Papers

Recombination and mutational robustness in neutral fitness landscapes

2019-10-21

Mutational robustness quantifies the effect of random mutations on fitness. When mutational robustness is high, most mutations do not change fitness or have only a minor effect on it. From the point of view of fitness landscapes, robust genotypes form neutral networks of almost equal fitness. Using deterministic population models it has been shown that selection favors genotypes inside such networks, which results in increased mutational robustness. Here we demonstrate that this effect is massively enhanced by recombination. Our results are based on a detailed analysis of mesa-shaped fitness landscapes, where we derive precise expressions for the dependence of the robustness on the landscape parameters for recombining and non-recombining populations. In addition, we carry out numerical simulations on different types of random holey landscapes as well as on an empirical fitness landscape. We show that the mutational robustness of a genotype generally correlates with its recombination weight, a new measure that quantifies the likelihood for the genotype to arise from recombination. We argue that the favorable effect of recombination on mutational robustness is a highly universal feature that may have played an important role in the emergence and maintenance of mechanisms of genetic exchange.

📄 PDF Abstract BibTeX arXiv:1902.07303

Code (0)

등록된 구현이 없습니다.

Similar Papers 제목 키워드 기반

Fundamental Properties of the Evolution of Mutational Robustness

2015-08-31

Evolution on neutral networks of genotypes has been found in models to concentrate on genotypes with high mutational robustness, to a degree determined by the topology of the network. Here analysis is generalized beyond …

The evolution, evolvability and engineering of gene regulatory DNA

2022-03-09 · Nature 2022 3 · Eeshit Dhaval Vaishnav, Carl G. de Boer, Jennifer Molinet, Moran Yassour 외

Mutations in non-coding regulatory DNA sequences can alter gene expression, organismal phenotype and fitness. Constructing complete fitness landscapes, in which DNA sequences are mapped to fitness, is a long-standing goa…

Geometry of fitness landscapes: Peaks, shapes and universal positive epistasis

2021-05-18 · Kristina Crona, Joachim Krug, Malvika Srivastava

Darwinian evolution is driven by random mutations, genetic recombination (gene shuffling) and selection that favors genotypes with high fitness. For systems where each genotype can be represented as a bitstring of length…

Augmenting Biological Fitness Prediction Benchmarks with Landscapes Features from GraphFLA

2025-10-28 · Mingyu Huang, Shasha Zhou, Ke Li arxiv

Machine learning models increasingly map biological sequence-fitness landscapes to predict mutational effects. Effective evaluation of these models requires benchmarks curated from empirical data. Despite their impressiv…

Functional bottlenecks can emerge from non-epistatic underlying traits

2025-05-20 · Anna Ottavia Schulte, Samar Alqatari, Saverio Rossi, Francesco Zamponi

Protein fitness landscapes frequently exhibit epistasis, where the effect of a mutation depends on the genetic context in which it occurs, \textit{i.e.}, the rest of the protein sequence. Epistasis increases landscape co…