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Sequential Span Classification with Neural Semi-Markov CRFs for Biomedical Abstracts

Dividing biomedical abstracts into several segments with rhetorical roles is essential for supporting researchers{'} information access in the biomedical domain. Conventional methods have regarded the task as a sequence labeling task based on sequential sentence classification, i.e., they assign a rhetorical label to each sentence by considering the context in the abstract. However, these methods have a critical problem: they are prone to mislabel longer continuous sentences with the same rhetorical label. To tackle the problem, we propose sequential span classification that assigns a rhetorical label, not to a single sentence but to a span that consists of continuous sentences. Accordingly, we introduce Neural Semi-Markov Conditional Random Fields to assign the labels to such spans by considering all possible spans of various lengths. Experimental results obtained from PubMed 20k RCT and NICTA-PIBOSO datasets demonstrate that our proposed method achieved the best micro sentence-F1 score as well as the best micro span-F1 score.

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