paper-with-me

Papers

Simulating cell populations with explicit cell cycle length -- implications to cell cycle dependent tumour therapy

2025-03-29 · Peter Boldog, Gergely Röst

In this study, we present a stochastic simulation model designed to explicitly incorporate cell cycle length, overcoming limitations associated with classical compartmental models. Our approach employs a delay mechanism to represent the cell cycle, allowing the use of arbitrary distributions for cell cycle lengths. We demonstrate the feasibility of our model by fitting it to experimental data from melanoma cell lines previously studied by Vittadello et al. Notably, our model successfully replicates experimentally observed synchronization phenomena that multi-stage models could not adequately explain. By using a gamma distribution to model cell cycle lengths, we achieved excellent agreement between our simulations and empirical data, while significantly reducing computational complexity and parameter estimation challenges inherent in multi-stage approaches. Our results highlight the importance of explicitly incorporating cell cycle lengths in modeling cell populations, with potential implications for optimizing cell cycle-dependent tumor therapies.

📄 PDF Abstract BibTeX arXiv:2503.23254

Code (0)

등록된 구현이 없습니다.

Tasks

parameter estimation

Similar Papers 제목 키워드 기반

Self-organization principles of cell cycles and gene expressions in the development of cell populations

2021-05-16 · Xiaoliang Wang, Dongyun Bai

A big challenge in current biology is to understand the exact self-organization mechanism underlying complex multi-physics coupling developmental processes. With multiscale computations of from subcellular gene expressio…

CellCycleGAN: Spatiotemporal Microscopy Image Synthesis of Cell Populations using Statistical Shape Models and Conditional GANs

2020-10-22 · Dennis Bähr, Dennis Eschweiler, Anuk Bhattacharyya, Daniel Moreno-Andrés 외

Automatic analysis of spatio-temporal microscopy images is inevitable for state-of-the-art research in the life sciences. Recent developments in deep learning provide powerful tools for automatic analyses of such image d…

BenchmarkingCell SegmentationImage GenerationTime Series+1

Computational challenges of cell cycle analysis using single cell transcriptomics

2022-08-10 · Alexander Chervov, Andrei Zinovyev

The cell cycle is one of the most fundamental biological processes important for understanding normal physiology and various pathologies such as cancer. Single cell RNA sequencing technologies give an opportunity to anal…

A computational scheme connecting gene regulatory network dynamics with heterogeneous stem cell regeneration

2024-04-17 · Yakun Li, Xiyin Liang, Jinzhi Lei

Stem cell regeneration is a vital biological process in self-renewing tissues, governing development and tissue homeostasis. Gene regulatory network dynamics are pivotal in controlling stem cell regeneration and cell typ…

Analytical cell size distribution: lineage-population bias and parameter inference

2022-06-13 · Arthur Genthon

Solving population balance equations, we derive analytical steady-state cell size distributions for single-lineage experiments, such as the mother machine. These experiments are fundamentally different from batch culture…