paper-with-me

홈 › Papers

SOLD: SELFIES-based Objective-driven Latent Diffusion

2025-09-03 · Elbert Ho arxiv

Recently, machine learning has made a significant impact on de novo drug design. However, current approaches to creating novel molecules conditioned on a target protein typically rely on generating molecules directly in the 3D conformational space, which are often slow and overly complex. In this work, we propose SOLD (SELFIES-based Objective-driven Latent Diffusion), a novel latent diffusion model that generates molecules in a latent space derived from 1D SELFIES strings and conditioned on a target protein. In the process, we also train an innovative SELFIES transformer and propose a new way to balance losses when training multi-task machine learning models.Our model generates high-affinity molecules for the target protein in a simple and efficient way, while also leaving room for future improvements through the addition of more data.

📄 PDF Abstract BibTeX arXiv:2509.25198

Code (0)

등록된 구현이 없습니다.

Similar Papers 제목 키워드 기반

Structure-based RNA Design by Step-wise Optimization of Latent Diffusion Model

2026-01-27 · Qi Si, Xuyang Liu, Penglei Wang, Xin Guo 외 arxiv

RNA inverse folding, designing sequences to form specific 3D structures, is critical for therapeutics, gene regulation, and synthetic biology. Current methods, focused on sequence recovery, struggle to address structural…

Reinforcement Learning

STAR-VAE: Latent Variable Transformers for Scalable and Controllable Molecular Generation

2025-11-04 · Bum Chul Kwon, Ben Shapira, Moshiko Raboh, Shreyans Sethi 외 arxiv

The chemical space of drug-like molecules is vast, motivating the development of generative models that must learn broad chemical distributions, enable conditional generation by capturing structure-property representatio…

Total Selfie: Generating Full-Body Selfies

2023-08-28 · CVPR 2024 1 · Bowei Chen, Brian Curless, Ira Kemelmacher-Shlizerman, Steven M. Seitz

We present a method to generate full-body selfies from photographs originally taken at arms length. Because self-captured photos are typically taken close up, they have limited field of view and exaggerated perspective t…

Training-Free Generative Sampling via Moment-Matched Score Smoothing

2026-05-14 · Zhenyu Yao, Daniel Paulin arxiv

Diffusion models generate samples by denoising along the score of a perturbed target distribution. In practice, one trains a neural diffusion model, which is computationally expensive. Recent work suggests that score mat…

Image Generation

Molecules Meet Language: Confound-Aware Representation Learning and Chemical Property Steering in Transformer-VAE Latent Spaces

2026-05-07 · Zakaria Elabid, Jan Andrzejewski, Bartosz Brzoza, Attila Cangi arxiv

Molecular generative models often assume meaningful latent geometry, but apparent property predictability can reflect sequence-level shortcuts rather than chemical organization. We study this issue in an unsupervised aut…

Representation Learning