paper-with-me

홈 › Papers

Structural Entities Extraction and Patient Indications Incorporation for Chest X-ray Report Generation

2024-05-23 · Kang Liu, Zhuoqi Ma, Xiaolu Kang, Zhusi Zhong, Zhicheng Jiao, Grayson Baird, Harrison Bai, Qiguang Miao

The automated generation of imaging reports proves invaluable in alleviating the workload of radiologists. A clinically applicable reports generation algorithm should demonstrate its effectiveness in producing reports that accurately describe radiology findings and attend to patient-specific indications. In this paper, we introduce a novel method, \textbf{S}tructural \textbf{E}ntities extraction and patient indications \textbf{I}ncorporation (SEI) for chest X-ray report generation. Specifically, we employ a structural entities extraction (SEE) approach to eliminate presentation-style vocabulary in reports and improve the quality of factual entity sequences. This reduces the noise in the following cross-modal alignment module by aligning X-ray images with factual entity sequences in reports, thereby enhancing the precision of cross-modal alignment and further aiding the model in gradient-free retrieval of similar historical cases. Subsequently, we propose a cross-modal fusion network to integrate information from X-ray images, similar historical cases, and patient-specific indications. This process allows the text decoder to attend to discriminative features of X-ray images, assimilate historical diagnostic information from similar cases, and understand the examination intention of patients. This, in turn, assists in triggering the text decoder to produce high-quality reports. Experiments conducted on MIMIC-CXR validate the superiority of SEI over state-of-the-art approaches on both natural language generation and clinical efficacy metrics.

📄 PDF Abstract BibTeX arXiv:2405.14905

Code (1)

mk-runner/sei 공식 구현 pytorch

Tasks

cross-modal alignmentDecoderDiagnosticMedical Report GenerationText Generation

Similar Papers 제목 키워드 기반

Natural Language Processing Accurately Categorizes Indications, Findings and Pathology Reports from Multicenter Colonoscopy

2021-08-25 · Shashank Reddy Vadyala, Eric A. Sherer

Colonoscopy is used for colorectal cancer (CRC) screening. Extracting details of the colonoscopy findings from free text in electronic health records (EHRs) can be used to determine patient risk for CRC and colorectal sc…

Deep Learning Approaches for Extracting Adverse Events and Indications of Dietary Supplements from Clinical Text

2020-09-16 · Yadan Fan, Sicheng Zhou, Yi-Fan Li, Rui Zhang

The objective of our work is to demonstrate the feasibility of utilizing deep learning models to extract safety signals related to the use of dietary supplements (DS) in clinical text. Two tasks were performed in this st…

Deep Learningnamed-entity-recognitionNamed Entity RecognitionNamed Entity Recognition (NER)+2

Digital Twin Generators for Disease Modeling

2024-05-02 · Nameyeh Alam, Jake Basilico, Daniele Bertolini, Satish Casie Chetty 외

A patient's digital twin is a computational model that describes the evolution of their health over time. Digital twins have the potential to revolutionize medicine by enabling individual-level computer simulations of hu…

Drug Repurposing for Cancer: An NLP Approach to Identify Low-Cost Therapies

2019-11-18 · Shivashankar Subramanian, Ioana Baldini, Sushma Ravichandran, Dmitriy A. Katz-Rogozhnikov 외

More than 200 generic drugs approved by the U.S. Food and Drug Administration for non-cancer indications have shown promise for treating cancer. Due to their long history of safe patient use, low cost, and widespread ava…

Entity Extraction using GANGeneral ClassificationLanguage ModelingLanguage Modelling

Incorporating Lexico-semantic Heuristics into Coreference Resolution Sieves for Named Entity Recognition at Document-level

2016-05-01 · LREC 2016 5 · Marcos Garcia

This paper explores the incorporation of lexico-semantic heuristics into a deterministic Coreference Resolution (CR) system for classifying named entities at document-level. The highest precise sieves of a CR tool are en…

coreference-resolutionCoreference Resolutionnamed-entity-recognitionNamed Entity Recognition+2