TocBERT: Medical Document Structure Extraction Using Bidirectional Transformers
Text segmentation holds paramount importance in the field of Natural Language Processing (NLP). It plays an important role in several NLP downstream tasks like information retrieval and document summarization. In this work, we propose a new solution, namely TocBERT, for segmenting texts using bidirectional transformers. TocBERT represents a supervised solution trained on the detection of titles and sub-titles from their semantic representations. This task was formulated as a named entity recognition (NER) problem. The solution has been applied on a medical text segmentation use-case where the Bio-ClinicalBERT model is fine-tuned to segment discharge summaries of the MIMIC-III dataset. The performance of TocBERT has been evaluated on a human-labeled ground truth corpus of 250 notes. It achieved an F1-score of 84.6% when evaluated on a linear text segmentation problem and 72.8% on a hierarchical text segmentation problem. It outperformed a carefully designed rule-based solution, particularly in distinguishing titles from subtitles.
Code (0)
등록된 구현이 없습니다.
Tasks
Document SummarizationHierarchical Text SegmentationInformation Retrievalnamed-entity-recognitionNamed Entity RecognitionNamed Entity Recognition (NER)NERSegmentationText SegmentationSimilar Papers 제목 키워드 기반
A Bidirectional Tree Tagging Scheme for Joint Medical Relation Extraction
Joint medical relation extraction refers to extracting triples, composed of entities and relations, from the medical text with a single model. One of the solutions is to convert this task into a sequential tagging task. …
Medical Relation ExtractionRelationRelation ExtractionFrom Chaos to Clarity: Schema-Constrained AI for Auditable Biomedical Evidence Extraction from Full-Text PDFs
Biomedical evidence synthesis relies on accurate extraction of methodological, laboratory, and outcome variables from full-text research articles, yet these variables are embedded in complex scientific PDFs that make man…
Document AIBidirectional Hierarchical Attention Networks based on Document-level Context for Emotion Cause Extraction
Emotion cause extraction (ECE) aims to extract the causes behind the certain emotion in text. Some works related to the ECE task have been published and attracted lots of attention in recent years. However, these methods…
Emotion Cause ExtractionGraph AttentionA Concept-Centered Hypertext Approach to Case-Based Retrieval
The goal of case-based retrieval is to assist physicians in the clinical decision making process, by finding relevant medical literature in large archives. We propose a research that aims at improving the effectiveness o…
Decision MakingRelational ReasoningRetrievalMedicalBERT: enhancing biomedical natural language processing using pretrained BERT-based model
Recent advances in natural language processing (NLP) have been driven bypretrained language models like BERT, RoBERTa, T5, and GPT. Thesemodels excel at understanding complex texts, but biomedical literature, withits dom…
Relation ExtractionQuestion AnsweringTransfer Learning