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Molecule retrieval from MS/MS spectrum (bonus chemical formulae) 벤치마크

Molecule retrieval from MS/MS spectrum (bonus chemical formulae) on MassSpecGym

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Hit rate @ 1

3.06 5.258 7.455 9.652 11.85 2024-10 2026-09 MIST — 9.57 (2024-10-30) DeepSets + Fourier features — 6.56 (2024-10-30) Fingerprint FFN — 5.09 (2024-10-30) DeepSets — 4.42 (2024-10-30) Random — 3.06 (2024-10-30) JESTR — 11.85 (2024-11-18) JESTR_NR — 11.82 (2024-11-18) ESP — 11.05 (2024-11-18) MIST — 9.57 (2024-10-30) JESTR — 11.85 (2024-11-18)
RankModel Hit rate @ 1Hit rate @ 5Hit rate @ 20MCES @ 1 Extra Training Data PaperCodeYear
1 JESTR 11.8532.9561.46 JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data 2024
2 JESTR_NR 11.8233.4861.46 JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data 2024
3 ESP 11.0527.4252.20 JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data 2024
4 MIST 9.5722.1141.1212.75 MassSpecGym: A benchmark for the discovery and identification of molecules pluskal-lab/massspecgym 2024
5 DeepSets + Fourier features 6.5616.4633.4614.14 MassSpecGym: A benchmark for the discovery and identification of molecules pluskal-lab/massspecgym 2024
6 Fingerprint FFN 5.0914.6931.9714.94 MassSpecGym: A benchmark for the discovery and identification of molecules pluskal-lab/massspecgym 2024
7 DeepSets 4.4214.4630.7615.04 MassSpecGym: A benchmark for the discovery and identification of molecules pluskal-lab/massspecgym 2024
8 Random 3.0611.3527.7413.87 MassSpecGym: A benchmark for the discovery and identification of molecules pluskal-lab/massspecgym 2024
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