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SLEEPER: interpretable Sleep staging via Prototypes from Expert Rules

2019-10-14 · Irfan Al-Hussaini, Cao Xiao, M. Brandon Westover, Jimeng Sun

Sleep staging is a crucial task for diagnosing sleep disorders. It is tedious and complex as it can take a trained expert several hours to annotate just one patient's polysomnogram (PSG) from a single night. Although deep learning models have demonstrated state-of-the-art performance in automating sleep staging, interpretability which defines other desiderata, has largely remained unexplored. In this study, we propose Sleep staging via Prototypes from Expert Rules (SLEEPER), which combines deep learning models with expert defined rules using a prototype learning framework to generate simple interpretable models. In particular, SLEEPER utilizes sleep scoring rules and expert defined features to derive prototypes which are embeddings of PSG data fragments via convolutional neural networks. The final models are simple interpretable models like a shallow decision tree defined over those phenotypes. We evaluated SLEEPER using two PSG datasets collected from sleep studies and demonstrated that SLEEPER could provide accurate sleep stage classification comparable to human experts and deep neural networks with about 85% ROC-AUC and .7 kappa.

📄 PDF Abstract BibTeX arXiv:1910.06100

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Tasks

Automatic Sleep Stage ClassificationSleep Stage DetectionSleep Staging

Methods 이 논문이 사용한 방법론

Tanh Activation 설명 없음
Sigmoid Activation 설명 없음
LSTM An LSTM is a type of recurrent neural network that addresses the vanishing gradient problem in vanilla…
1D CNN 1D Convolutional Neural Networks are similar to well known and more established 2D Convolutional Neural Networks. 1D Convolutional Neural Networks are used mainly used on text and…
BiLSTM A Bidirectional LSTM, or biLSTM, is a sequence processing model that consists of two LSTMs: one taking the input in a forward direction, and the other in a backwards…
Convolution A convolution is a type of matrix operation, consisting of a kernel, a small matrix of weights, that slides over input data performing element-wise multiplication with the…
CNN BiLSTM A CNN BiLSTM is a hybrid bidirectional LSTM and CNN architecture. In the original formulation applied to named entity recognition, it…
Interpretability 설명 없음

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