paper-with-me

Papers

A multilayer PPI network analysis of different life stages in C. elegans

2016-02-26

Molecular networks act as the backbone of cellular activities, providing an {excellent} opportunity to understand the developmental changes in an organism. While network data usually constitute only stationary network graphs, constructing multilayer PPI network may provide clues to the particular developmental role at each {stage of life} and may unravel the importance of these developmental changes. The developmental biology model of {Caenorhabditis elegans} {analyzed} here provides a ripe platform to understand the patterns of evolution during life stages of an organism. In the present study, the widely studied network properties exhibit overall similar statistics for all the PPI layers. Further, the analysis of the degree-degree correlation and spectral properties not only reveals crucial differences in each PPI layer but also indicates the presence of the varying complexity among them. The PPI layer of Nematode life stage exhibits various network properties different to rest of the PPI layers, indicating the specific role of cellular diversity and developmental transitions at this stage. The framework presented here provides a direction to explore and understand developmental changes occurring in different life stages of an organism.

📄 PDF Abstract BibTeX arXiv:1602.08314

Code (0)

등록된 구현이 없습니다.

Tasks

Diversity

Similar Papers 제목 키워드 기반

Celeganser: Automated Analysis of Nematode Morphology and Age

2020-05-11 · Linfeng Wang, Shu Kong, Zachary Pincus, Charless Fowlkes

The nematode Caenorhabditis elegans (C. elegans) serves as an important model organism in a wide variety of biological studies. In this paper we introduce a pipeline for automated analysis of C. elegans imagery for the p…

Fibration symmetries and cluster synchronization in the Caenorhabditis elegans connectome

2023-05-30 · Bryant Avila, Pedro Augusto, Manuel Zimmer, Matteo Serafino 외

Capturing how the Caenorhabditis elegans connectome structure gives rise to its neuron functionality remains unclear. It is through fiber symmetries found in its neuronal connectivity that synchronization of a group of n…

The multilayer connectome of Caenorhabditis elegans

2016-08-31

Connectomics has focused primarily on the mapping of synaptic links in the brain; yet it is well established that extrasynaptic volume transmission, especially via monoamines and neuropeptides, is also critical to brain …

A Bilayer Segmentation-Recombination Network for Accurate Segmentation of Overlapping C. elegans

2024-11-26 · Mengqian Dinga, Jun Liua, Yang Luo, Jinshan Tang

Caenorhabditis elegans (C. elegans) is an excellent model organism because of its short lifespan and high degree of homology with human genes, and it has been widely used in a variety of human health and disease models. …

Instance SegmentationSegmentationSemantic Segmentation

Bayesian Detection of Abnormal ADS in Mutant Caenorhabditis elegans Embryos

2018-03-13

Cell division timing is critical for cell fate specification and morphogenesis during embryogenesis. How division timings are regulated among cells during development is poorly understood. Here we focus on the comparison…

quantile regressionVocal Bursts Type Prediction