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Bayesian inference for logistic models using Polya-Gamma latent variables

2012-05-02 · Nicholas G. Polson, James G. Scott, Jesse Windle

We propose a new data-augmentation strategy for fully Bayesian inference in models with binomial likelihoods. The approach appeals to a new class of Polya-Gamma distributions, which are constructed in detail. A variety of examples are presented to show the versatility of the method, including logistic regression, negative binomial regression, nonlinear mixed-effects models, and spatial models for count data. In each case, our data-augmentation strategy leads to simple, effective methods for posterior inference that: (1) circumvent the need for analytic approximations, numerical integration, or Metropolis-Hastings; and (2) outperform other known data-augmentation strategies, both in ease of use and in computational efficiency. All methods, including an efficient sampler for the Polya-Gamma distribution, are implemented in the R package BayesLogit. In the technical supplement appended to the end of the paper, we provide further details regarding the generation of Polya-Gamma random variables; the empirical benchmarks reported in the main manuscript; and the extension of the basic data-augmentation framework to contingency tables and multinomial outcomes.

📄 PDF Abstract BibTeX arXiv:1205.0310

Code (2)

kushagragpt99/MCMC
zoj613/polya-gamma

Tasks

Bayesian InferenceComputational EfficiencyData AugmentationNumerical Integrationregression

Methods 이 논문이 사용한 방법론

Polya-Gamma Augmentation This method applies Polya-Gamma latent variables as a way to obtain closed form expressions for full-conditionals of posterior distributions in sampling algorithms like MCMC.

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