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Comparative analysis of deep learning approaches for AgNOR-stained cytology samples interpretation

2022-10-19 · João Gustavo Atkinson Amorim, André Victória Matias, Allan Cerentini, Luiz Antonio Buschetto Macarini, Alexandre Sherlley Onofre, Fabiana Botelho Onofre, Aldo von Wangenheim

Cervical cancer is a public health problem, where the treatment has a better chance of success if detected early. The analysis is a manual process which is subject to a human error, so this paper provides a way to analyze argyrophilic nucleolar organizer regions (AgNOR) stained slide using deep learning approaches. Also, this paper compares models for instance and semantic detection approaches. Our results show that the semantic segmentation using U-Net with ResNet-18 or ResNet-34 as the backbone have similar results, and the best model shows an IoU for nucleus, cluster, and satellites of 0.83, 0.92, and 0.99 respectively. For instance segmentation, the Mask R-CNN using ResNet-50 performs better in the visual inspection and has a 0.61 of the IoU metric. We conclude that the instance segmentation and semantic segmentation models can be used in combination to make a cascade model able to select a nucleus and subsequently segment the nucleus and its respective nucleolar organizer regions (NORs).

📄 PDF Abstract BibTeX arXiv:2210.10641

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Instance SegmentationSegmentationSemantic Segmentation

Methods 이 논문이 사용한 방법론

Softmax The Softmax output function transforms a previous layer's output into a vector of probabilities. It is commonly used for multiclass classification. Given an input vector $x$…
RPN A Region Proposal Network, or RPN, is a fully convolutional network that simultaneously predicts object bounds and objectness scores at each position. The RPN is trained…
RoIAlign Region of Interest Align, or RoIAlign, is an operation for extracting a small feature map from each RoI in detection and segmentation based tasks. It removes the harsh…
Concatenated Skip Connection A Concatenated Skip Connection is a type of skip connection that seeks to reuse features by concatenating them to new layers, allowing more information to be retained from…
Mask R-CNN Mask R-CNN extends Faster R-CNN to solve instance segmentation tasks. It achieves this by adding a branch for predicting an…
Convolution A convolution is a type of matrix operation, consisting of a kernel, a small matrix of weights, that slides over input data performing element-wise multiplication with the…
ReLU How Do I Communicate to Expedia? How Do I Communicate to Expedia? – Call ☎️ +1-(888) 829 (0881) or +1-805-330-4056 or +1-805-330-4056 for Live Support & Special Travel…
Max Pooling Max Pooling is a pooling operation that calculates the maximum value for patches of a feature map, and uses it to create a downsampled (pooled) feature map. It is usually…

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