paper-with-me

Papers

Deep ensembles in bioimage segmentation

2021-12-24 · Loris Nanni, Daniela Cuza, Alessandra Lumini, Andrea Loreggia, Sheryl Brahnam

Semantic segmentation consists in classifying each pixel of an image by assigning it to a specific label chosen from a set of all the available ones. During the last few years, a lot of attention shifted to this kind of task. Many computer vision researchers tried to apply autoencoder structures to develop models that can learn the semantics of the image as well as a low-level representation of it. In an autoencoder architecture, given an input, an encoder computes a low dimensional representation of the input that is then used by a decoder to reconstruct the original data. In this work, we propose an ensemble of convolutional neural networks (CNNs). In ensemble methods, many different models are trained and then used for classification, the ensemble aggregates the outputs of the single classifiers. The approach leverages on differences of various classifiers to improve the performance of the whole system. Diversity among the single classifiers is enforced by using different loss functions. In particular, we present a new loss function that results from the combination of Dice and Structural Similarity Index. The proposed ensemble is implemented by combining different backbone networks using the DeepLabV3+ and HarDNet environment. The proposal is evaluated through an extensive empirical evaluation on two real-world scenarios: polyp and skin segmentation. All the code is available online at https://github.com/LorisNanni.

📄 PDF Abstract BibTeX arXiv:2112.12955

Code (0)

등록된 구현이 없습니다.

Tasks

DecoderSegmentationSemantic Segmentation

Similar Papers 제목 키워드 기반

Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

2020-01-22 · 自然方法 2020 1 · Juan C. Caicedo, Allen Goodman, Kyle W. Karhohs, Beth A. Cimini 외

Segmenting the nuclei of cells in microscopy images is often the first step in the quantitative analysis of imaging data for biological and biomedical applications. Many bioimage analysis tools can segment nuclei in imag…

Segmentation

cubic: CUDA-accelerated 3D Bioimage Computing

2025-10-15 · Alexandr A. Kalinin, Anne E. Carpenter, Shantanu Singh, Matthew J. O'Meara arxiv

Quantitative analysis of multidimensional biological images is useful for understanding complex cellular phenotypes and accelerating advances in biomedical research. As modern microscopy generates ever-larger 2D and 3D d…

BioImageLoader: Easy Handling of Bioimage Datasets for Machine Learning

2023-03-02 · Seongbin Lim, Xingjian Zhang, Emmanuel Beaurepaire, Anatole Chessel

BioImageLoader (BIL) is a python library that handles bioimage datasets for machine learning applications, easing simple workflows and enabling complex ones. BIL attempts to wrap the numerous and varied bioimages dataset…

Image Augmentation

JDLL: A library to run Deep Learning models on Java bioimage informatics platforms

2023-06-07 · Carlos Garcia Lopez de Haro, Stephane Dallongeville, Thomas Musset, Estibaliz Gomez de Mariscal 외

We present JDLL, an agile Java library that offers a comprehensive toolset/API to unify the development of high-end applications of DL for bioimage analysis and to streamline their installation and maintenance. JDLL prov…

F-BIAS: Towards a distributed national core facility for Bioimage Analysis

2024-09-23 · Mélodie Ambroset, Marie Anselmet, Clément Benedetti, Arthur Meslin 외

We discuss in this article the creation and organization of a national core facility for bioimage analysis, based on a distributed team. F-BIAS federates bioimage analysts across France and relies on them to deliver serv…