Mudslide: A Universal Nuclear Instance Segmentation Method
Nuclear instance segmentation has played a critical role in pathology image analysis. The main challenges arise from the difficulty in accurately segmenting densely overlapping instances and the high cost of precise mask-level annotations. Existing fully-supervised nuclear instance segmentation methods such as boundary-based methods struggle to capture differences between overlapping instances and thus fail in densely distributed blurry regions. They also face challenges transitioning to point supervision where annotations are simple and effective. Inspired by natural mudslides we propose a universal method called Mudslide that uses simple representations to characterize differences between different instances and can easily be extended from fully-supervised to point-supervised. oncretely we introduce a collapse field and leverage it to construct a force map and initial boundary enabling a distinctive representation for each instance. Each pixel is assigned a collapse force with distinct directions between adjacent instances. Starting from the initial boundary Mudslide executes a pixel-by-pixel collapse along various force directions. Pixels that collapse into the same region are considered as one instance concurrently accounting for both inter-instance distinctions and intra-instance coherence. Experiments on public datasets show superior performance in both fully-supervised and point-supervised tasks.
Code (0)
등록된 구현이 없습니다.
Tasks
Instance SegmentationSemantic SegmentationSimilar Papers 제목 키워드 기반
On generalisability of segment anything model for nuclear instance segmentation in histology images
Pre-trained on a large and diverse dataset, the segment anything model (SAM) is the first promptable foundation model in computer vision aiming at object segmentation tasks. In this work, we evaluate SAM for the task of …
Instance SegmentationSegmentationSemantic SegmentationZero-Shot LearningInstance Migration Diffusion for Nuclear Instance Segmentation in Pathology
Nuclear instance segmentation plays a vital role in disease diagnosis within digital pathology. However, limited labeled data in pathological images restricts the overall performance of nuclear instance segmentation. To …
Data AugmentationInstance SegmentationSegmentationSemantic SegmentationNuclear Instance Segmentation using a Proposal-Free Spatially Aware Deep Learning Framework
Nuclear segmentation in histology images is a challenging task due to significant variations in the shape and appearance of nuclei. One of the main hurdles in nuclear instance segmentation is overlapping nuclei where a s…
ClusteringInstance SegmentationNuclear SegmentationSegmentation+1Accurate Nuclear Segmentation with Center Vector Encoding
Nuclear segmentation is important and frequently demanded for pathology image analysis, yet is also challenging due to nuclear crowdedness and possible occlusion. In this paper, we present a novel bottom-up method for nu…
Nuclear SegmentationSegmentationNucEval: A Robust Evaluation Framework for Nuclear Instance Segmentation
In computational pathology, nuclear instance segmentation is a fundamental task with many downstream clinical applications. With the advent of deep learning, many approaches, including convolutional neural networks (CNNs…
Instance Segmentation