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Object detection neural network improves Fourier ptychography reconstruction

2020-11-23 · Florian Ströhl, Suyog Jadhav, Balpreet S. Ahluwalia, Krishna Agarwal, and Dilip K. Prasad

High resolution microscopy is heavily dependent on superb optical elements and superresolution microscopy even more so. Correcting unavoidable optical aberrations during post-processing is an elegant method to reduce the optical system’s complexity. A prime method that promises superresolution, aberration correction, and quantitative phase imaging is Fourier ptychography. This microscopy technique combines many images of the sample, recorded at differing illumination angles akin to computed tomography and uses error minimisation between the recorded images with those generated by a forward model. The more precise knowledge of those illumination angles is available for the image formation forward model, the better the result. Therefore, illumination estimation from the raw data is an important step and supports correct phase recovery and aberration correction. Here, we derive how illumination estimation can be cast as an object detection problem that permits the use of a fast convolutional neural network (CNN) for this task. We find that faster-RCNN delivers highly robust results and outperforms classical approaches by far with an up to 3-fold reduction in estimation errors. Intriguingly, we find that conventionally beneficial smoothing and filtering of raw data is counterproductive in this type of application. We present a detailed analysis of the network’s performance and provide all our developed software openly.

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Code (1)

IAmSuyogJadhav/NN-Illumination-Estimation-FPM pytorch

Tasks

Objectobject-detectionObject Detection

Methods 이 논문이 사용한 방법론

RPN A Region Proposal Network, or RPN, is a fully convolutional network that simultaneously predicts object bounds and objectness scores at each position. The RPN is trained…
Softmax The Softmax output function transforms a previous layer's output into a vector of probabilities. It is commonly used for multiclass classification. Given an input vector $x$…
Convolution A convolution is a type of matrix operation, consisting of a kernel, a small matrix of weights, that slides over input data performing element-wise multiplication with the…
RoIPool 설명 없음
Faster R-CNN Faster R-CNN is an object detection model that improves on Fast R-CNN by utilising a region proposal network…

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