paper-with-me

Papers

Persistent Laplacian-enhanced Algorithm for Scarcely Labeled Data Classification

2023-05-25 · Gokul Bhusal, Ekaterina Merkurjev, Guo-Wei Wei

The success of many machine learning (ML) methods depends crucially on having large amounts of labeled data. However, obtaining enough labeled data can be expensive, time-consuming, and subject to ethical constraints for many applications. One approach that has shown tremendous value in addressing this challenge is semi-supervised learning (SSL); this technique utilizes both labeled and unlabeled data during training, often with much less labeled data than unlabeled data, which is often relatively easy and inexpensive to obtain. In fact, SSL methods are particularly useful in applications where the cost of labeling data is especially expensive, such as medical analysis, natural language processing (NLP), or speech recognition. A subset of SSL methods that have achieved great success in various domains involves algorithms that integrate graph-based techniques. These procedures are popular due to the vast amount of information provided by the graphical framework and the versatility of their applications. In this work, we propose an algebraic topology-based semi-supervised method called persistent Laplacian-enhanced graph MBO (PL-MBO) by integrating persistent spectral graph theory with the classical Merriman-Bence- Osher (MBO) scheme. Specifically, we use a filtration procedure to generate a sequence of chain complexes and associated families of simplicial complexes, from which we construct a family of persistent Laplacians. Overall, it is a very efficient procedure that requires much less labeled data to perform well compared to many ML techniques, and it can be adapted for both small and large datasets. We evaluate the performance of the proposed method on data classification, and the results indicate that the proposed technique outperforms other existing semi-supervised algorithms.

📄 PDF Abstract BibTeX arXiv:2305.16239

Code (0)

등록된 구현이 없습니다.

Tasks

Classificationspeech-recognitionSpeech Recognition

Similar Papers 제목 키워드 기반

PLPCA: Persistent Laplacian Enhanced-PCA for Microarray Data Analysis

2023-06-09 · Sean Cottrell, Rui Wang, GuoWei Wei

Over the years, Principal Component Analysis (PCA) has served as the baseline approach for dimensionality reduction in gene expression data analysis. It primary objective is to identify a subset of disease-causing genes …

Dimensionality Reduction

Integration of persistent Laplacian and pre-trained transformer for protein solubility changes upon mutation

2023-10-28 · JunJie Wee, Jiahui Chen, Kelin Xia, Guo-Wei Wei

Protein mutations can significantly influence protein solubility, which results in altered protein functions and leads to various diseases. Despite of tremendous effort, machine learning prediction of protein solubility …

PLD-Tree: Persistent Laplacian Decision Tree for Protein-Protein Binding Free Energy Prediction

2024-12-24 · Xingjian Xu, Jiahui Chen, Chunmei Wang

Recent advances in topology-based modeling have accelerated progress in physical modeling and molecular studies, including applications to protein-ligand binding affinity. In this work, we introduce the Persistent Laplac…

Language ModelingLanguage ModellingLarge Language ModelMolecular Docking

Mathematics-assisted directed evolution and protein engineering

2023-06-06 · Yuchi Qiu, Guo-Wei Wei

Directed evolution is a molecular biology technique that is transforming protein engineering by creating proteins with desirable properties and functions. However, it is experimentally impossible to perform the deep muta…

Topological Data Analysis

Persistent de Rham-Hodge Laplacians in Eulerian representation for manifold topological learning

2024-08-01 · Zhe Su, Yiying Tong, Guo-Wei Wei

Recently, topological data analysis has become a trending topic in data science and engineering. However, the key technique of topological data analysis, i.e., persistent homology, is defined on point cloud data, which d…

Topological Data Analysis