Redox Poise during Rhodospirillum rubrum Phototrophic Growth Drives Large-scale Changes in Macromolecular Synthesis Pathways
During photoheterotrophic growth on organic substrates, purple nonsulfur photosynthetic bacteria like Rhodospirillum rubrum can acquire electrons by multiple means, including oxidation of organic substrates, oxidation of inorganic electron donors (e.g. H$_2$), and by reverse electron flow from the photosynthetic electron transport chain. These electrons are stored in the form of reduced electron-carrying cofactors (e.g. NAD(P)H and ferredoxin). The ratio of oxidized to reduced redox cofactors (e.g. ratio of NAD(P)+:NAD(P)H), or 'redox poise` is difficult to understand or predict, as are the the cellular processes for dissipating these reducing equivalents. Using physics-based models that capture mass action kinetics consistent with the thermodynamics of reactions and pathways, a range of redox conditions for heterophototrophic growth are evaluated, from conditions in which the NADP+/NADPH levels approached thermodynamic equilibrium to conditions in which the NADP+/NADPH ratio is far above the typical physiological values. Modeling results together with experimental measurements of macro molecule levels (DNA, RNA, proteins and fatty acids) indicate that the redox poise of the cell results in large-scale changes in the activity of biosynthetic pathways. Phototrophic growth is less coupled than expected to producing reductant, NAD(P)H, by reverse electron flow from the quinone pool. Instead, it primarily functions for ATP production (photophosphorylation), which drives reduction even when NADPH levels are relatively low compared to NADP+. The model, in agreement with experimental measurements of macromolecule ratios of cells growing on different carbon substrates, indicate that the dynamics of nucleotide versus lipid and protein production is likely a significant mechanism of balancing oxidation and reduction in the cell.
Code (0)
등록된 구현이 없습니다.
Similar Papers 제목 키워드 기반
Evaluating the stoichiometric and energetic constraints of cyanobacterial diurnal growth
Cyanobacteria are an integral part of the Earth's biogeochemical cycles and a promising resource for the synthesis of renewable bioproducts from atmospheric CO2 . Growth and metabolism of cyanobacteria are inherently tie…
RhythmImproving polyhydroxyalkanoates production in phototrophic mixed cultures by optimizing accumulator reactor operating conditions
Polyhydroxyalkanoates (PHAs) production with phototrophic mixed cultures (PMCs) has been recently proposed. These cultures can be selected under the permanent presence of carbon and the PHA production can be enhanced in …
Cultural Vocal Bursts Intensity PredictionTranscriptome and Redox Proteome Reveal Temporal Scales of Carbon Metabolism Regulation in Model Cyanobacteria Under Light Disturbance
We develop a systems approach based on an energy-landscape concept to differentiate interactions involving redox activities and conformational changes of proteins and nucleic acids interactions in multi-layered protein-D…
Physics-informed machine learningElectrolyte Flow Rate Control for Vanadium Redox Flow Batteries using the Linear Parameter Varying Framework
In this article, an electrolyte flow rate control approach is developed for an all-vanadium redox flow battery (VRB) system based on the linear parameter varying (LPV) framework. The electrolyte flow rate is regulated to…
Machine Learning based prediction of Vanadium Redox Flow Battery temperature rise under different charge-discharge conditions
Accurate prediction of battery temperature rise is very essential for designing an efficient thermal management scheme. In this paper, machine learning (ML) based prediction of Vanadium Redox Flow Battery (VRFB) thermal …
ManagementPredictionregression