Papers DNA analysis
“DNA analysis” 태그가 달린 논문 12편 · 필터 해제
Fast and Low-Cost Genomic Foundation Models via Outlier Removal
We propose the first unified adversarial attack benchmark for Genomic Foundation Models (GFMs), named GERM. Unlike existing GFM benchmarks, GERM offers the first comprehensive evaluation framework to systematically asses…
Adversarial AttackAdversarial RobustnessComputational EfficiencyDNA analysis+5Advanced wood species identification based on multiple anatomical sections and using deep feature transfer and fusion
In recent years, we have seen many advancements in wood species identification. Methods like DNA analysis, Near Infrared (NIR) spectroscopy, and Direct Analysis in Real Time (DART) mass spectrometry complement the long-e…
DNA analysisTransfer LearningDNAGPT: A Generalized Pre-trained Tool for Versatile DNA Sequence Analysis Tasks
Pre-trained large language models demonstrate potential in extracting information from DNA sequences, yet adapting to a variety of tasks and data modalities remains a challenge. To address this, we propose DNAGPT, a gene…
Binary ClassificationDNA analysisregressionDNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area. Existing works…
Computational EfficiencyCore Promoter DetectionCovid Variant PredictionData Compression+9A Fast and Compact Hybrid CNN for Hyperspectral Imaging-based Bloodstain Classification
In forensic sciences, blood is a shred of essential evidence for reconstructing crime scenes. Blood identification and classification may help to confirm a suspect, although several chemical processes are used to recreat…
ClassificationDNA analysisOn-CMOS High-Throughput Multi-Modal Amperometric DNA Analysis with Distributed Thermal Regulation
Accurate temperature regulation is critical for amperometric DNA analysis to achieve high fidelity, reliability, and throughput. In this work, a 9x6 cell array of mixed-signal CMOS distributed temperature regulators for …
DNA analysisA New String Edit Distance and Applications
String edit distances have been used for decades in applications ranging from spelling correction and web search suggestions to DNA analysis. Most string edit distances are variations of the Levenshtein distance and cons…
DNA analysisSpelling CorrectionComputer Architecture-Aware Optimisation of DNA Analysis Systems
DNA sequencing is revolutionising the field of medicine. DNA sequencers, the machines which perform DNA sequencing, have evolved from the size of a fridge to that of a mobile phone over the last two decades. The cost of …
DNA analysisSocial Fingerprinting: detection of spambot groups through DNA-inspired behavioral modeling
Spambot detection in online social networks is a long-lasting challenge involving the study and design of detection techniques capable of efficiently identifying ever-evolving spammers. Recently, a new wave of social spa…
DNA analysisTowards a HPC-oriented parallel implementation of a learning algorithm for bioinformatics applications
Background: The huge quantity of data produced in Biomedical research needs sophisticated algorithmic methodologies for its storage, analysis, and processing. High Performance Computing (HPC) appears as a magic bullet in…
AttributeDNA analysisDNA-inspired online behavioral modeling and its application to spambot detection
We propose a strikingly novel, simple, and effective approach to model online user behavior: we extract and analyze digital DNA sequences from user online actions and we use Twitter as a benchmark to test our proposal. W…
DNA analysisMassive migration from the steppe is a source for Indo-European languages in Europe
We generated genome-wide data from 69 Europeans who lived between 8,000-3,000 years ago by enriching ancient DNA libraries for a target set of almost four hundred thousand polymorphisms. Enrichment of these positions dec…
DNA analysis