Papers Genome Understanding
“Genome Understanding” 태그가 달린 논문 6편 · 필터 해제
GenoArmory: A Unified Evaluation Framework for Adversarial Attacks on Genomic Foundation Models
We propose the first unified adversarial attack benchmark for Genomic Foundation Models (GFMs), named GenoArmory. Unlike existing GFM benchmarks, GenoArmory offers the first comprehensive evaluation framework to systemat…
Adversarial AttackAdversarial DefenseAdversarial RobustnessGenome Understanding+1Fast and Low-Cost Genomic Foundation Models via Outlier Removal
We propose the first unified adversarial attack benchmark for Genomic Foundation Models (GFMs), named GERM. Unlike existing GFM benchmarks, GERM offers the first comprehensive evaluation framework to systematically asses…
Adversarial AttackAdversarial RobustnessComputational EfficiencyDNA analysis+5Efficient and Scalable Fine-Tune of Language Models for Genome Understanding
Although DNA foundation models have advanced the understanding of genomes, they still face significant challenges in the limited scale and diversity of genomic data. This limitation starkly contrasts with the success of …
Genome UnderstandingDNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area. Existing works…
Computational EfficiencyCore Promoter DetectionCovid Variant PredictionData Compression+9SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study
Self-supervised pre-training methods have brought remarkable breakthroughs in the understanding of text, image, and speech. Recent developments in genomics has also adopted these pre-training methods for genome understan…
Genome UnderstandingThe role of packaging sites in efficient and specific virus assembly
During the lifecycle of many single-stranded RNA viruses, including many human pathogens, a protein shell called the capsid spontaneously assembles around the viral genome. Understanding the mechanisms by which capsid pr…
Genome UnderstandingSpecificityVirology