Chemical Indexing
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Benchmarks
BC7 NLM-Chem
Most implemented
Papers
Chemical identification and indexing in PubMed full-text articles using deep learning and heuristics
The identification of chemicals in articles has attracted a large interest in the biomedical scientific community, given its importance in drug development research. Most of previous research have focused on PubMed abstr…
ArticlesChemical IndexingEntity Linkingnamed-entity-recognition+2Chemical Identification and Indexing in PubMed Articles via BERT and Text-to-Text Approaches
The Biocreative VII Track-2 challenge consists of named entity recognition, entity-linking (or entity-normalization), and topic indexing tasks -- with entities and topics limited to chemicals for this challenge. Named en…
ArticlesChemical IndexingEntity LinkingMetric Learning+5The overview of the NLM-Chem BioCreative VII track: full-text chemical identification and indexing in PubMed articles
The BioCreative NLM-Chem track calls for a community effort to fine-tune automated recognition of chemical names in biomedical literature. Chemical names are one of the most searched biomedical entities in PubMed and – a…
ArticlesChemical Entity RecognitionChemical IndexingEntity Linking+3Chemical detection and indexing in PubMed full text articles using deep learning and rule-based methods
Identifying chemicals in biomedical scientific literature is a crucial task for drug development research. The BioCreative NLM-Chem challenge promoted the development of automatic systems that can identify chemicals in f…
ArticlesChemical IndexingEntity LinkingNamed Entity Recognition (NER)+1