KEVS: Enhancing Segmentation of Visceral Adipose Tissue in Pre-Cystectomy CT with Gaussian Kernel Density Estimation
Purpose: The distribution of visceral adipose tissue (VAT) in cystectomy patients is indicative of the incidence of post-operative complications. Existing VAT segmentation methods for computed tomography (CT) employing intensity thresholding have limitations relating to inter-observer variability. Moreover, the difficulty in creating ground-truth masks limits the development of deep learning (DL) models for this task. This paper introduces a novel method for VAT prediction in pre-cystectomy CT, which is fully automated and does not require ground-truth VAT masks for training, overcoming aforementioned limitations. Methods: We introduce the Kernel density Enhanced VAT Segmentator ( KEVS), combining a DL semantic segmentation model, for multi-body feature prediction, with Gaussian kernel density estimation analysis of predicted subcutaneous adipose tissue to achieve accurate scan-specific predictions of VAT in the abdominal cavity. Uniquely for a DL pipeline, KEVS does not require ground-truth VAT masks. Results: We verify the ability of KEVS to accurately segment abdominal organs in unseen CT data and compare KEVS VAT segmentation predictions to existing state-of-the-art (SOTA) approaches in a dataset of 20 pre-cystectomy CT scans, collected from University College London Hospital (UCLH-Cyst), with expert ground-truth annotations. KEVS presents a 4.80% and 6.02% improvement in Dice Coefficient over the second best DL and thresholding-based VAT segmentation techniques respectively when evaluated on UCLH-Cyst. Conclusion: This research introduces KEVS; an automated, SOTA method for the prediction of VAT in pre-cystectomy CT which eliminates inter-observer variability and is trained entirely on open-source CT datasets which do not contain ground-truth VAT masks.
Code (0)
등록된 구현이 없습니다.
Tasks
Computed Tomography (CT)Density EstimationSegmentationSemantic SegmentationSimilar Papers 제목 키워드 기반
Context Driven Label Fusion for segmentation of Subcutaneous and Visceral Fat in CT Volumes
Quantification of adipose tissue (fat) from computed tomography (CT) scans is conducted mostly through manual or semi-automated image segmentation algorithms with limited efficacy. In this work, we propose a completely u…
Computed Tomography (CT)Image SegmentationSegmentationSemantic SegmentationFully Automated and Standardized Segmentation of Adipose Tissue Compartments by Deep Learning in Three-dimensional Whole-body MRI of Epidemiological Cohort Studies
Purpose: To enable fast and reliable assessment of subcutaneous and visceral adipose tissue compartments derived from whole-body MRI. Methods: Quantification and localization of different adipose tissue compartments from…
SegmentationSensitivitySpecificityTransfer Learning+1Attention GhostUNet++: Enhanced Segmentation of Adipose Tissue and Liver in CT Images
Accurate segmentation of abdominal adipose tissue, including subcutaneous (SAT) and visceral adipose tissue (VAT), along with liver segmentation, is essential for understanding body composition and associated health risk…
Computational EfficiencyLiver SegmentationSegmentationAATCT-IDS: A Benchmark Abdominal Adipose Tissue CT Image Dataset for Image Denoising, Semantic Segmentation, and Radiomics Evaluation
Methods: In this study, a benchmark \emph{Abdominal Adipose Tissue CT Image Dataset} (AATTCT-IDS) containing 300 subjects is prepared and published. AATTCT-IDS publics 13,732 raw CT slices, and the researchers individual…
ArticlesDenoisingImage DenoisingSegmentation+1FatSegNet : A Fully Automated Deep Learning Pipeline for Adipose Tissue Segmentation on Abdominal Dixon MRI
Purpose: Development of a fast and fully automated deep learning pipeline (FatSegNet) to accurately identify, segment, and quantify abdominal adipose tissue on Dixon MRI from the Rhineland Study - a large prospective pop…