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Improving Aleatoric Uncertainty Quantification in Multi-Annotated Medical Image Segmentation with Normalizing Flows

2021-08-04 · M. M. A. Valiuddin, C. G. A. Viviers, R. J. G. van Sloun, P. H. N. de With, F. van der Sommen

Quantifying uncertainty in medical image segmentation applications is essential, as it is often connected to vital decision-making. Compelling attempts have been made in quantifying the uncertainty in image segmentation architectures, e.g. to learn a density segmentation model conditioned on the input image. Typical work in this field restricts these learnt densities to be strictly Gaussian. In this paper, we propose to use a more flexible approach by introducing Normalizing Flows (NFs), which enables the learnt densities to be more complex and facilitate more accurate modeling for uncertainty. We prove this hypothesis by adopting the Probabilistic U-Net and augmenting the posterior density with an NF, allowing it to be more expressive. Our qualitative as well as quantitative (GED and IoU) evaluations on the multi-annotated and single-annotated LIDC-IDRI and Kvasir-SEG segmentation datasets, respectively, show a clear improvement. This is mostly apparent in the quantification of aleatoric uncertainty and the increased predictive performance of up to 14 percent. This result strongly indicates that a more flexible density model should be seriously considered in architectures that attempt to capture segmentation ambiguity through density modeling. The benefit of this improved modeling will increase human confidence in annotation and segmentation, and enable eager adoption of the technology in practice.

📄 PDF Abstract BibTeX arXiv:2108.02155

Code (1)

cviviers/prob_3d_segmentation pytorch

Tasks

Decision MakingImage SegmentationMedical Image SegmentationSegmentationSemantic SegmentationUncertainty Quantification

Methods 이 논문이 사용한 방법론

ReLU How Do I Communicate to Expedia? How Do I Communicate to Expedia? – Call ☎️ +1-(888) 829 (0881) or +1-805-330-4056 or +1-805-330-4056 for Live Support & Special Travel…
Max Pooling Max Pooling is a pooling operation that calculates the maximum value for patches of a feature map, and uses it to create a downsampled (pooled) feature map. It is usually…
Convolution A convolution is a type of matrix operation, consisting of a kernel, a small matrix of weights, that slides over input data performing element-wise multiplication with the…
Concatenated Skip Connection A Concatenated Skip Connection is a type of skip connection that seeks to reuse features by concatenating them to new layers, allowing more information to be retained from…
Normalizing Flows Normalizing Flows are a method for constructing complex distributions by transforming a probability density through a series of invertible mappings. By repeatedly applying…
U-Net 설명 없음

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